Utilizing benchtop NMR spectroscopy to identify regioisomers in pharmaceutical compounds

NMR spectroscopy is a powerful technique that is ideally suited to the characterization and analysis of a diverse array of chemical compounds.

Unlike many other analytical techniques, NMR spectroscopy can easily distinguish subtle differences in chemical structures.

Isomers are compounds with the same molecular formula but differing structures. They can exhibit a range of chemical and physical properties. A deeper insight into isomerism is key to the development of safer, more effective drugs and their alternatives.

Benchtop NMR spectroscopy can even be used to confidently distinguish between regioisomers, which only differ according to substitution patterns around an aromatic ring.

This article outlines the analysis of several one-dimensional (1H, 13C) and two-dimensional (1H-1H COSY, 1H-13C HSQC) spectra obtained via the Oxford Instruments X-Pulse broadband benchtop NMR spectrometer.

In the examples presented here, differences in spectra—most notably the aromatic regions—are used to distinguish the three regioisomers of hydroxyacetanilide (ortho-, meta-, and para-). These examples showcase the ease with which the regioisomers of small organic molecules can be differentiated.

Para-hydroxy-acetanilide is the most common isomer. The World Health Organization considers this isomer—paracetamol or acetaminophen—the first line of defense against pain.

Paracetamol offers antipyretic (fever prevention and reduction) benefits and can help mitigate allergic symptoms when combined with other drugs.

Image Credit: Olya Abdugalieva/Shutterstock.com

Ortho-hydroxyacetanilide also has an array of everyday uses, such as anti-inflammatory and antirheumatic drugs. Meta-hydroxyacetanilide has not been marketed as a drug thus far, but it does offer some analgesic (pain-relieving) properties.

Molecular structures for the hydroxyacetanilide isomers, ortho (left), meta (centre), and para (right).

Figure 1. Molecular structures for the hydroxyacetanilide isomers, ortho (left), meta (centre), and para (right). Image Credit: Oxford Instruments NMR

Hydroxyacetanilides

Hydroxyacetanilides are comprised of acetamido {–NHC(O)CH3} and hydroxy (–OH) groups substituted on an aromatic ring. Figure 1 shows the relative substitution positions of two groups around the aromatic ring, as these give rise to three regioisomers: ortho-, meta- and para-.

NMR spectroscopy can distinguish each isomer due to the observable differences in the aromatic regions (δH 6-8 ppm, δC 110-170 ppm) that stem from the various substitution patterns.

A thorough inspection of these samples’ molecular structures enabled the identification of seven chemically unique hydrogen environments and eight chemically unique carbon environments in both the ortho- and meta-isomers.

Symmetry around the aromatic ring in the para-isomer results in just five hydrogen and six carbon environments. This is because in the para-isomer, 2 and 6, and 3 and 5 are chemically equivalent.

These isomers could be distinguished because it is anticipated that each chemically unique environment will give a single signal in an NMR spectrum.

Proton (1H) NMR

Figure 2 displays proton NMR spectra for the three hydroxy-acetanilides assessed. In these three cases, the methyl group 9-CH3 gives a singlet at δH 2 ppm, while broad signals are observed from the hydroxy 11-OH and amine 7-NH hydrogen around δH 9-10 ppm. It is possible to distinguish these compounds by evaluating the remaining aromatic signals in the range δH 6-8 ppm.

1H spectra for the (a) ortho- (b) meta- (c) para- isomers of hydroxyacetanilide in DMSO-d6.

1H spectra for the (a) ortho- (b) meta- (c) para- isomers of hydroxyacetanilide in DMSO-d6.

Figure 2. 1H spectra for the (a) ortho- (b) meta- (c) para- isomers of hydroxyacetanilide in DMSO-d6. Image Credit: Oxford Instruments NMR

It is important to note that every chemically unique hydrogen environment will give a single signal in the 1H NMR spectrum.

These signals can be comprised of one or more individual peaks. These signals' number and relative intensities will depend on other nearby hydrogen atoms. It should also be noted that in most instances, ‘nearby’ should be considered to mean separated by at most three chemical bonds, such as H–C–C–H.

In the case of meta-hydroxyacetanilide, 4-, 5- and 6-CH are close enough that each signal will be made up of multiple peaks, while 2-CH is far enough from any other hydrogen atoms that it will yield a signal with a single peak.

Figure 2b confirms that all of these signals are present, but there is a degree of overlap in the aromatic region of the 1H NMR spectrum.

An identical approach can be employed in assessing ortho-hydroxyacetanilide, where it is anticipated that all four aromatic hydrogens would give rise to signals with multiple peaks that exhibit a degree of overlap at benchtop frequencies.

Para-hydroxyacetanilide is different, however. Its molecular symmetry results in two observable signals, including two main peaks arising from a single three-bond interaction (for example, 2-H–C–C–H-3). This noteworthy difference means that para-hydroxyacetanilide (paracetamol, Figure 2c) can be distinguished from the other regioisomers investigated.

The notable signal overlap in this case means that more information would be required to assign all three regioisomers unequivocally via NMR spectroscopy. A simple one-dimensional proton spectrum would not be sufficient in this instance.

Carbon-13 (13C) NMR

One means of addressing this issue is to evaluate one-dimensional carbon-13 spectra. Because these spectra are acquired proton-decoupled, each chemical environment gives rise to a single peak in the NMR spectrum (Figure 3).

The methyl group 9-CH3 gives a signal at δC 23 ppm for all three compounds, while 8-CO gives a peak at δC 168 ppm, and aromatic carbons 1-6 give signals over a range of 160-105 ppm.

Para-hydroxyacetanilide can easily be identified via its proton NMR spectrum because its symmetry means there are just four unique chemical environments in the the aromatic ring (1-C, 2/6-CH, 3/5-CH, 4-C), and therefore only four aromatic signals are present in the 13C{1H} NMR spectrum (Figure 3c).

13C {1H} spectra for the (a) ortho- (b) meta- (c) para- isomers of hydroxyacetanilide in DMSO-d6.

13C {1H} spectra for the (a) ortho- (b) meta- (c) para- isomers of hydroxyacetanilide in DMSO-d6.

Figure 3. 13C {1H} spectra for the (a) ortho- (b) meta- (c) para- isomers of hydroxyacetanilide in DMSO-d6. Image Credit: Oxford Instruments NMR

Ortho- (Figure 3a) and meta-hydroxyacetanilide (Figure 3b) have six aromatic signals. It may be feasible to assign each of these signals to the appropriate aromatic carbon by employing a theoretical understanding of the origin of chemical shifts.

Two-dimensional spectra

One-dimensional 1H and 13C NMR spectra can provide a good amount of structural information, but it is possible to combine two-dimensional NMR spectra - specifically, the signal dispersion of the 13C spectra and the informational content of the 1H spectra can be combined - to provide even more insight into the sample’s structure.

This combination of two-dimensional NMR spectra allows users to unequivocally distinguish the three regioisomers.

1H-13C correlation spectra

A two-dimensional 1H-13C HSQC (Heteronuclear Single Quantum Coherence) spectrum displays one-dimensional 1H and 13C spectra along the x- and y-axes, respectively.

Cross peaks in this spectrum correspond to one bond 1H-13C interactions, meaning it is possible to connect 13C environments to their corresponding 1H environments.

The 1H-13C HSQC spectra features aromatic regions for the three hydroxyacetanilide regioisomers (Figure 4). In every case, each signal is clearly resolved by showing the data in two-dimensions. This allows all three regioisomers to be identified and distinguished.

In the example presented here, the most easily identifiable isomer continues to be para-hydroxyacetanilide (Figure 4c). The two signals here are distinguished, appearing as two distinct peaks.

In the case of the ortho- (Figure 4a) and meta- (Figure 4b) isomer, it is possible to observe four signals in the two-dimensional HSQC spectrum. A signal comprising a single sharp peak can be identified as meta-hydroxyacetanilide (δH + 6.96, δC +109.9 ppm), which corresponds to 2-CH.

Interactions between adjacent CH groups in the molecules result in all other signals in the HSQC exhibiting clear broadening (or multiple peaks) in the 1H dimension.

Aromatic regions of 1H-13C HSQC spectra for the (a) ortho- (b) meta- (c) paraisomers of hydroxyacetanilide in DMSO-d6.

Aromatic regions of 1H-13C HSQC spectra for the (a) ortho- (b) meta- (c) paraisomers of hydroxyacetanilide in DMSO-d6.

Figure 4. Aromatic regions of 1H-13C HSQC spectra for the (a) ortho- (b) meta- (c) paraisomers of hydroxyacetanilide in DMSO-d6. Image Credit: Oxford Instruments NMR

1H-1H correlation spectra

A 1H-1H COSY (Correlation Spectroscopy) spectrum represents another type of two-dimensional NMR spectrum ideally suited to distinguishing regioisomers. This technique is useful where off-diagonal signals appear in the spectrum due to coupling between 1H NMR signals. This effect gives rise to signals exhibiting multiple peaks in the one-dimensional spectrum.

Aromatic regions of 1H-1H COSY spectra for the (a) ortho- (b) meta- (c) paraisomers of hydroxyacetanilide in DMSO-d6.

Aromatic regions of 1H-1H COSY spectra for the (a) ortho- (b) meta- (c) paraisomers of hydroxyacetanilide in DMSO-d6.

Figure 5. Aromatic regions of 1H-1H COSY spectra for the (a) ortho- (b) meta- (c) paraisomers of hydroxyacetanilide in DMSO-d6. Image Credit: Oxford Instruments NMR

Figure 5 displays aromatic regions of the 1H-1H COSY spectra for all three hydroxyacetanilide regioisomers. It was not possible to distinguish these in this case, due to the presence of substantial signal overlap.

Summary

This article investigated the chemical structures of three regioisomers: ortho-, meta- and para-hydroxyacetanilide. Their structures were explored using a combination of one- and two-dimensional NMR spectra, all acquired using an Oxford Instruments X-Pulse broadband benchtop NMR spectrometer.

Utilizing benchtop NMR spectroscopy to identify regioisomers in pharmaceutical compounds

Image Credit: Oxford Instruments NMR

These spectra facilitate the clear differentiation between three isomers of the same small organic molecule hydroxyacetanilide. These isomers are key to the pain- and fever-relieving characteristics of paracetamol.

The X-Pulse broadband benchtop NMR spectrometer can be provided with a comprehensive range of standardized one- and two- dimensional characterization sequences and analyses.

An optional 25-position autosampler is also available, allowing users to maximize throughput and efficiency, for example, when identifying pharmaceutically relevant target molecules via screening studies.

Acknowledgments

Produced from materials originally authored by Oxford Instruments.

About Oxford Instruments NMR

Oxford Instruments offers a range of Nuclear Magnetic Resonance (NMR) instruments to multiple industries. Our portfolio includes, X-Pulse, a high-resolution cryogen-free broadband benchtop NMR spectrometer. Combining true broadband X-nuclei capability, flow chemistry, reaction monitoring and variable temperature with superior spectral resolution, X-Pulse lets you perform a wide range of experiments on the bench in your lab.

The MQC+ range of benchtop NMR analysers offers broad applications across the agriculture, foods, consumer products, textiles, and polymer industries. MQC+ analysers are used to measure oil, water, fluorine, and solid fat in a variety of samples and are typically used for quality assurance and quality control. To increase laboratory productivity and efficiency, MQC+ analysers can be used with the MQ-Auto sample automation system. MQR is a low-resolution, high-performance TD-NMR research system designed for applications based on relaxation and/or diffusion measurements. Our GeoSpec NMR core analysers are designed specifically for studies of core samples from oilfield reservoirs, with installations in almost every major oil producer and SCAL laboratory world-wide.


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Last updated: Sep 2, 2024 at 8:02 AM

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